Marker values from Fig 8.
A function to filter mRaw using a process that removes any component that has a period of half a turn. The first and last four elements receive different processing to avoid indexing errors.
Filter mRaw into mRawF excluding any component with period of half a turn.
Plot unfiltered and filtered versions of mRaw.
Peaks that appear in the unfiltered version but not in the filtered
version are due to signal component with a period of half a turn.
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A function to plot Digitial Fourier Transforms.
Mathematica labels the first element of a list as "1", so to allow
correct labelling of bins, the function deletes Bin 0 from position 1
of "Fourier[data]".
Plot
DFTs of unfiltered and filtered versions of mRaw.
Any significant signal component with a period of half a turn will
cause a peak in Bin 40.
Note that the DFT for the unfiltered data has such a peak. However, the
DFT for the filtered data has no peak in that
bin.
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Since
there is no peak in Bin 40, mRawF contains only unwanted components.
Subtract mRawF from mRaw to create an array without these components.
Plot a
DFT for mRawD.
Bin 40 will contain any signal with a period of half a turn. We see the
DFT is dominated by such a component.
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Here is the waveform for the first 10 turns of mRawD.
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A function to estimate the standard error of the mean
A function to give the t-value of Student's
t-distribution for a two tailed 95% Confidence Level.
The first two lines define it for two different Degrees of Freedom (the
number of samples minus one)
The third line ensures it returns NaN if accidentally called
with any other value of df.
A function to estimate if
mean signal value exceeds mean noise value with certainty greater than
95%.
This will only be applied to data derived in the same way as mRawD.
"Signal" means 20 values for a marker or 40 values for a marker pair.
Assume the mean noise value is zero with a standard error equal to the
standard error for the mean signal value.
Let this standard error be
.
Then the standard error for the difference between the mean signal
value and the assumed mean noise value is:
= ![]()
The deviation for a 95% Confidence Level is equal to
times the standard error.
So for a mean signal value to exceed the mean noise value with
certainty greater than 95%, the difference between mean signal value
and zero (the assumed mean noise value) must be greater than
![]()
A function to convert a 1D, 320 element array into a
2D array of 320/k rows each containing k elements.
Take[data,{e,e+k-1}] takes elements in the range e .. e+k-1.
A function to pass values with error bars to MultipleListPlot.
A function to print a table from a list of headers and a list of columns.
Get a 2D array of values for 20 complete turns, 16
elements per turn.
Calculate and display the means and standard errors for each column.
Report if means exceed noise with certainty greater than 95%.
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Marker Mean Std. Error Exceeds Noise (95%CL)
1 0.238 0.135 False
2 0.325 0.128 False
3 0.150 0.141 False
4 -0.188 0.144 False
5 -0.650 0.150 True
6 -0.875 0.141 True
7 -0.538 0.167 True
8 -0.038 0.165 False
9 0.625 0.134 True
10 0.888 0.111 True
11 0.738 0.138 True
12 0.400 0.143 False
13 -0.213 0.143 False
14 -0.338 0.142 False
15 -0.350 0.181 False
16 -0.175 0.163 False
This resembles the upper plot in Fig. 8 of Miller's
paper.
Means for six markers exceed noise with certainty greater than 95%.
However, markers that are 180 degrees apart measure the same direction,
but do not give the same values because the mirrors are not orthogonal
to the arms. This is called the "Full Period Effect" (p238 in Miller's
paper). Fig. 30 shows that with the interferometer adjusted for six
fringes in the field of view, which was usual, the full period affect
would be about 75% of the half period effect.
So to obtain true values for each direction, the data from opposite
pairs of markers must be combined as in the lower plot in Fig. 8.
To do this the following code will get a 2D array of 40 half turns, 8
elements per half turn and compute the means and standard errors for
each column.
It will also report if means exceed noise with certainty greater than
95%.
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Marker Mean Std. Error Exceeds Noise (95%CL)
1+9 0.431 0.099 True
2+10 0.606 0.095 True
3+11 0.444 0.108 True
4+12 0.106 0.111 False
5+13 -0.431 0.108 True
6+14 -0.606 0.108 True
7+15 -0.444 0.123 True
8+16 -0.106 0.115 False
The above shows that Miller`s data contains a signal
with means for SIX out of eight directions exceeding noise with
certainty greater than 95%.
Here is a comparison with Miller`s final values in the last row
of figures in Fig. 8.
Marker Mean Std. Error Miller's value
1+9 0.431 0.099 0.330
2+10 0.606 0.095 0.580
3+11 0.444 0.108 0.430
4+12 0.106 0.111 0.050
5+13 -0.431 0.108 -0.520
6+14 -0.606 0.108 -0.620
7+15 -0.444 0.123 -0.450
8+16 -0.106 0.115 -0.120
The above shows that Miller obtained results that were
very close to the results obtained here. This suggests that his
algorithm performed remarkably well at extracting signal from
noise.
However, could the signal processing used above have converted drift
and noise in Miller's data into a periodic looking signal? That is,
could the above clean looking signal be nothing more than an artifact
of the processing?
To confirm this is not the case, the above processing is applied below
to an array containing random values. If the processing does not
extract a signal from such values, then it is very unlikely that the
signal extracted from Miller's data is an artifact of the processing.
To approximate the variability in Miller's values, the array is created
by starting with an intial value of 10 and then creating each
successive value by subtracting 60/320 to simulate drift and then
adding a random value. It was found that the variability in Miller's
values was slightly exceeded by choosing the random value from a normal
distribution and multiplying by a factor of 1.05.
Histogram differences between adjacent elements of mRaw and mRnd to compare their variability.
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The above shows that mRnd exhibits slightly greater variability than mRaw. That should provide a fair test of the capability of the signal processing algorithm to not extract a false signal from random values.
Filter mRnd into mRndF.
This will exclude components with period of half a turn.
Plot mRnd and mRndF.
As before, peaks that appear in the unfiltered version but not in the
filtered version will be due to "signal" component with a period of
half a turn, but they are expected to be purely random in this case.
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Here are DFTs of unfiltered and filtered versions of
mRnd.
Note that neither DFT has a prominent peak in Bin 40, although the
filtered version is smoother in that region.
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Subtract mRndF from mRnd to get rid of unwanted components.
Plot the DFT for mRndD.
Although some component of period half a turn can be expected to be
present in Bin 40, there is no peak of significance as there was in the
case of mRawD
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Here is a plot of the first ten "turns".
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Compute and plot the means and standard errors for 20 complete "turns" using values from mRndD.
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Marker Mean Std. Error Exceeds Noise (95%CL)
1 0.038 0.175 False
2 -0.088 0.205 False
3 -0.163 0.196 False
4 -0.263 0.158 False
5 0.000 0.174 False
6 0.038 0.241 False
7 0.088 0.201 False
8 0.125 0.140 False
9 -0.013 0.131 False
10 0.038 0.175 False
11 -0.050 0.200 False
12 0.088 0.223 False
13 -0.025 0.228 False
14 0.013 0.216 False
15 0.125 0.226 False
16 0.050 0.189 False
None of the means exceeds noise with certainty greater than 95%. But as explained earlier, to obtain true values for each direction, data from opposite pairs of markers must be combined.
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Marker Mean Std. Error Exceeds Noise (95%CL)
1+9 0.013 0.108 False
2+10 -0.025 0.133 False
3+11 -0.106 0.139 False
4+12 -0.088 0.138 False
5+13 -0.013 0.142 False
6+14 0.025 0.160 False
7+15 0.106 0.149 False
8+16 0.088 0.116 False
None of the means exceed noise with certainty greater
than 95% even when data from opposite markers is combined.
The above shows that the processing used herein extracts a signal from
Miller's data, but does not extract a signal from random data with
similar variability to Miller's data.
Hence we can conclude that the signal extracted from Miller's data is a
real signal and is not an artifact of the processing.
Created by Mathematica (June 16, 2008)